miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|21187047|gb|AJ471091.1|AJ471091 CTCGGGCTACTCAAGCCCAACGGCAAGATGATCATGGTCGGCCTCCCAGAGCAGCCTATCGAGGTCCCTCCCTTTGCTCT
GGTTGCCAGGAACAAGACCCTGGCCGGGAGCTGCATCGGCGGCATGAGGGACACCCAGGAGATGCTGGACCTCGCGGCGA
AGCACGGCGTGACGGCAGACATCGAGGTGATAAGCGCGGAGTACGTGAACACAGCGATGGAGCGCCTTGCCAAGGCTGAC
GTCAGGTATCGATTCGTCATCGACATCGCCAACACCCTCGACAAGGCCGCCGCTGCAGCCACAACCGAGTGACCGCCGAC
GTAACTCTAAGCGCTGCTCGCGGTCTACGTTGGTCTCTGGTTCTCTGCTGTTATCACATACTTTATCAGTAGTACTAGTA
ACATTGAACAGTCGAAAATTATTGTCAGTGATGTACTCCCTCCGTTCCTAAATATAAGTCTTTTAAGAGATTTCACTAAG
AGACTACATACAAAACAAAATGAGTGAATCTATACTTTAAAGTATGTCTAAATACATCAG




Most similar to sp|Q0J6T3|CADH5_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q0J6T3|CADH5_ORYSJ Putative cinnamyl alcohol dehydrogenase 5
           OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2
          Length = 354

 Score =  162 bits (409), Expect = 2e-39
 Identities = 81/93 (87%), Positives = 88/93 (94%)
 Frame = +1

Query: 1   LGLLKPNGKMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTAD 180
           LGLLKPNGKMI+VGLPE+P+E+PPFALVA NKTLAGSCIGGM DT EM+DLAAKHGVTA+
Sbjct: 258 LGLLKPNGKMILVGLPEKPMEIPPFALVASNKTLAGSCIGGMADT-EMIDLAAKHGVTAE 316

Query: 181 IEVISAEYVNTAMERLAKADVRYRFVIDIANTL 279
           IEVI A+YVNTAMERLAKADVRYRFVIDI NTL
Sbjct: 317 IEVIGADYVNTAMERLAKADVRYRFVIDIGNTL 349